Sorry I was commenting on the screenshots in your previous email. I thought they were from freeview. We do not support Qdec anymore in 7.x versions.
Ruopeng On Oct 19, 2020, at 11:09 AM, 李梦君 <meng...@csu.edu.cn<mailto:meng...@csu.edu.cn>> wrote: External Email - Use Caution Thanks for your help, I have tried FS 7.1.1, while there is no Qdec command when I tried FS 7.1.1 in the terminal window. How should I start the Qdec in the 7.1.1 version. Best wishes Mengjun Li -----原始邮件----- 发件人:"Wang, Ruopeng" <rwa...@mgh.harvard.edu<mailto:rwa...@mgh.harvard.edu>> 发送时间:2020-10-19 21:07:45 (星期一) 收件人: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> 抄送: 主题: Re: [Freesurfer] Problem of the Mapping Label to the Subject I think this is a bug in freeview from FS 6.0.0 that has been fixed in 7.x. Would it be possible for you to try FS 7.1.1? A quick workaround you may try first is to change the offset for the inflated surface to 0 0 0 in freeview 6.0.0. Best, Ruopeng On Oct 19, 2020, at 2:38 AM, 李梦君 <meng...@csu.edu.cn<mailto:meng...@csu.edu.cn>> wrote: External Email - Use Caution Dear FreeSurfer Developers: My name is Mengjun Li, I am a MD in the Second Xiangya Hospital, Central South University. I compared the cortex, area, volume in the mild traumatic brain injury patients with health control by the FreeSurFer and found the problem when mapping label to the single subjects. There is statistic difference in the area and volume between the mild traumatic brain injury patients and the health control, I defined the statistic difference region as a label on the fsaverage and mapped this label to subjects by the Qdec. Although the label defined on the fsaverage was mapped onto all subjects successfully,the label in the subjects did not match well with the inflated cortex of the subjects. At the same time, the volume and area value of the label have been extracted in every subject and I found that there is no statistic difference between the mild traumatic brain injury patients and health control. I have checked the segmentation of every subjects and it was a good job done by FreeSurFer. Attached figures illustrated the label mapping results. Figure 1: the label defined on the fsaverage Figure 2: the lateral view of the label in the subjects Figure 3: the inferior view of the label in the subjects FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Platform: macOS High Sierra I am sending this email for help since I am not sure how to fix this problem. Looking forward to hearing your reply! Thank you very much! Best wishes Mengjun Li Second Xiangya Hospital Central South University. <Figure 1.png><Figure 2.png><Figure 3.png>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
