External Email - Use Caution Hi Doug,
Here is the command: mri_glmfit-sim --glmdir lh.rs6980093.thickness10.glmdir --perm 1000 2.0 abs --cwp 0.05 --2spaces --bg 4 And here is the output: mri_glmfit simulation done 4.78645 mri_glmfit simulation done 4.806 mri_glmfit simulation done 4.81553 mri_glmfit simulation done 4.81997 mri_surfcluster --in lh.rs6980093.thickness10.glmdir/rs6980093_thickness/sig.mgh --mask lh.rs6980093.thickness10.glmdir/mask.mgh --cwsig lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.cluster.mgh --sum lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.cluster.summary --ocn lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.ocn.mgh --annot aparc --cwpvalthresh 0.05 --o lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.masked.mgh --no-fixmni --csd lh.rs6980093.thickness10.glmdir/csd/perm.th20.abs.j001-rs6980093_thickness.csd --csd lh.rs6980093.thickness10.glmdir/csd/perm.th20.abs.j002-rs6980093_thickness.csd --csd lh.rs6980093.thickness10.glmdir/csd/perm.th20.abs.j003-rs6980093_thickness.csd --csd lh.rs6980093.thickness10.glmdir/csd/perm.th20.abs.j004-rs6980093_thickness.csd --csdpdf lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.pdf.dat --vwsig lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.voxel.mgh --vwsigmax lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.voxel.max.dat --oannot lh.rs6980093.thickness10.glmdir/rs6980093_thickness/perm.th20.abs.sig.ocn.annot --bonferroni 2 --surf white ERROR: CSDmerge: CSDs have same seed Thank you! Meaghan On Wed, Sep 9, 2020 at 4:28 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > *Message sent from a system outside of UConn.* > > please send the full command line and terminal output > > On 9/9/2020 3:19 PM, Meaghan Perdue wrote: > > External Email - Use Caution > Hello Freesurfer experts, > > We're receiving the following error message when trying to run > mri_glmfit-sim: > ERROR: CSDmerge: CSDs have same seed > > This only occurs when we try to run the permutation on the LH for > thickness. We've been able to run the simulation successfully on LH surface > area and RH thickness and area. > > How can we troubleshoot this problem? > > Thank you, > Meaghan Perdue > > -- > Meaghan Perdue > she | her | hers > > PhD Student > Developmental Psychology > Neurobiology of Language > University of Connecticut > Bousfield A302 > Visit my website <https://mvperdue16.wixsite.com/meaghanperdue> > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Meaghan Perdue she | her | hers PhD Student Developmental Psychology Neurobiology of Language University of Connecticut Bousfield A302 Visit my website <https://mvperdue16.wixsite.com/meaghanperdue>
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