External Email - Use Caution Hi Aldo,
What do you mean by 'still is not working'? What command did you run where (Matlab or Shell), and what was the error message? I've had a quick look at that website, and from what I can tell it does not try to tell you how to run recon-all from Matlab. All it does is tell you how to get the FreeSurfer matlab functions (in $FREESURFER_HOME/matlab/) available in Matlab. E.g., after following that setup, you should be able to call 'read_curv()' from Matlab to read morphometry data files like <subject>/surf/lh.area. If you want to run recon-all (or any other system command) from Matlab, have a look at the Matlab 'system' function. I would recommend against it though. Best, Tim > On August 26, 2020 at 7:10 PM "Camargo, Aldo" <acama...@som.umaryland.edu> > wrote: > > > External Email - Use Caution > > Hi Freesurfer community, > > Does someone know how to run recon-all on MATLAB ? I tried the settings > suggest on > https://web.stanford.edu/group/vista/cgi-bin/wiki/index.php/FreeSurfer, but > still is not working; > > Thanks a lot in advance and have a great day, > > Aldo > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
