External Email - Use Caution
Thanks
Sure,
Here is the log file.
Knut Jørgen
On 16/07/2020 16:12, Douglas N. Greve wrote:
Can you send the log file?
On 7/15/2020 1:51 PM, Knut J Bjuland wrote:
External Email - Use Caution
Dear freesurfer experts
I was able to run the same subects on the longitudinal stream using
FS 6 , but when I use FS7.1 I got this error
RROR: Number of filenames for --iscalein should agree with number of
init LTAs (--ixforms)!
ERROR:
@#@FSTIME 2020:07:15:18:43:31 longmc N 5 e 1.75 S 0.47 U 0.15 P 35%
M 2444 F 88 R 26962 W 0 c 321 w 33906 I 19328 O 14 L 31.52 31.63 31.62
@#@FSLOADPOST 2020:07:15:18:43:33 longmc N 5 31.55 31.64 31.63
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC
2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 007_Run1.long.007_Run1_base exited with ERRORS at Wed
Jul 15 18:43:33 CEST 2020
Knut Jørgen Bjuland
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Wed Jul 15 18:43:17 CEST 2020
/cluster/work/jobs/998106/007_Run1.long.007_Run1_base
/cluster/software/FreeSurfer/7.1.0-centos7_x86_64/bin/recon-all
-long 007_Run1 007_Run1_base -all
subjid 007_Run1.long.007_Run1_base
setenv SUBJECTS_DIR /cluster/work/jobs/998106
FREESURFER_HOME /cluster/software/FreeSurfer/7.1.0-centos7_x86_64
Actual FREESURFER_HOME /cluster/software/FreeSurfer/7.1.0-centos7_x86_64
build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize unlimited
coredumpsize unlimited
memoryuse 8388608 kbytes
vmemoryuse unlimited
descriptors 131072
memorylocked unlimited
maxproc 769998
maxlocks unlimited
maxsignal 769998
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache available
Mem: 188G 15G 170G 36M 2.4G 171G
Swap: 4.0G 0B 4.0G
########################################
program versions used
7.1.0 (freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b)
7.1.0
ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:17-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:17-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:17-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:18-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:18-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:18-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:18-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:18-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:19-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:19-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:19-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:19-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:19-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:20-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:21-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:22-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
7.1.0
ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
7.1.0
ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:23-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:24-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:25-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:26-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:27-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:28-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:28-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:28-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:28-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:28-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:29-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:29-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:29-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:29-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
mri_motion_correct.fsl 7.1.0
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:29-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
#######################################
GCADIR /cluster/software/FreeSurfer/7.1.0-centos7_x86_64/average
GCA RB_all_2020-01-02.gca
GCASkull RB_all_withskull_2020_01_02.gca
AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
GCSDIR /cluster/software/FreeSurfer/7.1.0-centos7_x86_64/average
GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
#######################################
Wed Jul 15 18:43:32 CEST 2020
setenv SUBJECTS_DIR /cluster/work/jobs/998106
cd /cluster/work/jobs/998106/007_Run1.long.007_Run1_base
/cluster/software/FreeSurfer/7.1.0-centos7_x86_64/bin/longmc -long 007_Run1 007_Run1_base -s 007_Run1.long.007_Run1_base
freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b
longmc 7.1.0
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
pid 6334
cp /cluster/work/jobs/998106/007_Run1/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1/mri/orig/002-iscale.txt /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri
mri_concatenate_lta /cluster/work/jobs/998106/007_Run1/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1_base/mri/transforms/007_Run1_to_007_Run1_base.lta /cluster/work/jobs/998106/007_Run1/mri/orig/002-long.lta
volume geometry:
extent : (160, 192, 192)
voxel : ( 1.2000, 1.2500, 1.2500)
x_(ras) : ( 0.9932, 0.1164, 0.0062)
y_(ras) : (-0.1149, 0.9865, -0.1168)
z_(ras) : (-0.0197, 0.1153, 0.9931)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/937466/007_Run1/mri/rawavg.mgz
volume geometry:
extent : (256, 256, 256)
voxel : ( 1.0000, 1.0000, 1.0000)
x_(ras) : (-1.0000, 0.0000, 0.0000)
y_(ras) : ( 0.0000, -0.0000, -1.0000)
z_(ras) : ( 0.0000, 1.0000, 0.0000)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/998106/007_Run1/mri/norm.mgz
Read individual LTAs
Warning: dst volume of lta1 doesn't match src volume of lta2
Volume geometry for lta1-dst:
Volume geometry for lta2-src:
Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2...
Writing combined LTA to file /cluster/work/jobs/998106/007_Run1/mri/orig/002-long.lta...
mri_concatenate_lta successful.
cp /cluster/work/jobs/998106/007_Run1/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1/mri/orig/001-iscale.txt /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri
mri_concatenate_lta /cluster/work/jobs/998106/007_Run1/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1_base/mri/transforms/007_Run1_to_007_Run1_base.lta /cluster/work/jobs/998106/007_Run1/mri/orig/001-long.lta
volume geometry:
extent : (160, 192, 192)
voxel : ( 1.2000, 1.2500, 1.2500)
x_(ras) : ( 0.9932, 0.1164, 0.0062)
y_(ras) : (-0.1149, 0.9865, -0.1168)
z_(ras) : (-0.0197, 0.1153, 0.9931)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/937466/007_Run1/mri/rawavg.mgz
volume geometry:
extent : (256, 256, 256)
voxel : ( 1.0000, 1.0000, 1.0000)
x_(ras) : (-1.0000, 0.0000, 0.0000)
y_(ras) : ( 0.0000, -0.0000, -1.0000)
z_(ras) : ( 0.0000, 1.0000, 0.0000)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/998106/007_Run1/mri/norm.mgz
Read individual LTAs
Warning: dst volume of lta1 doesn't match src volume of lta2
Volume geometry for lta1-dst:
Volume geometry for lta2-src:
Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2...
Writing combined LTA to file /cluster/work/jobs/998106/007_Run1/mri/orig/001-long.lta...
mri_concatenate_lta successful.
mri_robust_template --mov /cluster/work/jobs/998106/007_Run1/mri/orig/002.mgz /cluster/work/jobs/998106/007_Run1/mri/orig/001.mgz --ixforms /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001.lta --average 1 --noit --template /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/rawavg.mgz --iscalein /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001-iscale.txt
7.1.0
--mov: Using /cluster/work/jobs/998106/007_Run1/mri/orig/002.mgz as movable/source volume.
--mov: Using /cluster/work/jobs/998106/007_Run1/mri/orig/001.mgz as movable/source volume.
Total: 2 input volumes
--ixforms: Will use init XFORMS.
--average: Using method 1 for template computation.
--noit: Will output only first template (no iterations)!
--template: Using /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/rawavg.mgz as template output volume.
--iscalein: Will use init intensity scales
ERROR: Number of filenames for --iscalein should agree with number of init LTAs (--ixforms)!
ERROR:
@#@FSTIME 2020:07:15:18:43:31 longmc N 5 e 1.75 S 0.47 U 0.15 P 35% M 2444 F 88 R 26962 W 0 c 321 w 33906 I 19328 O 14 L 31.52 31.63 31.62
@#@FSLOADPOST 2020:07:15:18:43:33 longmc N 5 31.55 31.64 31.63
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 007_Run1.long.007_Run1_base exited with ERRORS at Wed Jul 15 18:43:33 CEST 2020
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
#New# invocation of recon-all
Wed Jul 15 18:43:57 CEST 2020
/cluster/work/jobs/998106/007_Run1.long.007_Run1_base
/cluster/software/FreeSurfer/7.1.0-centos7_x86_64/bin/recon-all
-long 007_Run1 007_Run1_base -localGI
subjid 007_Run1.long.007_Run1_base
setenv SUBJECTS_DIR /cluster/work/jobs/998106
FREESURFER_HOME /cluster/software/FreeSurfer/7.1.0-centos7_x86_64
Actual FREESURFER_HOME /cluster/software/FreeSurfer/7.1.0-centos7_x86_64
build-stamp.txt: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize unlimited
coredumpsize unlimited
memoryuse 8388608 kbytes
vmemoryuse unlimited
descriptors 131072
memorylocked unlimited
maxproc 769998
maxlocks unlimited
maxsignal 769998
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buff/cache available
Mem: 188G 15G 170G 36M 2.4G 172G
Swap: 4.0G 0B 4.0G
########################################
program versions used
7.1.0 (freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b)
7.1.0
ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:57-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:58-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
7.1.0
ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
7.1.0
ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:43:59-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:00-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
mri_motion_correct.fsl 7.1.0
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.0 TimeStamp: 2020/07/15-16:44:01-GMT BuildTime: May 11 2020 12:09:35 BuildStamp: freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b User: kjbjuland Machine: c5-31 Platform: Linux PlatformVersion: 3.10.0-957.12.2.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
#######################################
GCADIR /cluster/software/FreeSurfer/7.1.0-centos7_x86_64/average
GCA RB_all_2020-01-02.gca
GCASkull RB_all_withskull_2020_01_02.gca
AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
GCSDIR /cluster/software/FreeSurfer/7.1.0-centos7_x86_64/average
GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
#######################################
Wed Jul 15 18:44:04 CEST 2020
setenv SUBJECTS_DIR /cluster/work/jobs/998106
cd /cluster/work/jobs/998106/007_Run1.long.007_Run1_base
/cluster/software/FreeSurfer/7.1.0-centos7_x86_64/bin/longmc -long 007_Run1 007_Run1_base -s 007_Run1.long.007_Run1_base
freesurfer-linux-centos7_x86_64-7.1.0-20200511-813297b
longmc 7.1.0
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
pid 7412
cp /cluster/work/jobs/998106/007_Run1/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1/mri/orig/002-iscale.txt /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri
mri_concatenate_lta /cluster/work/jobs/998106/007_Run1/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1_base/mri/transforms/007_Run1_to_007_Run1_base.lta /cluster/work/jobs/998106/007_Run1/mri/orig/002-long.lta
volume geometry:
extent : (160, 192, 192)
voxel : ( 1.2000, 1.2500, 1.2500)
x_(ras) : ( 0.9932, 0.1164, 0.0062)
y_(ras) : (-0.1149, 0.9865, -0.1168)
z_(ras) : (-0.0197, 0.1153, 0.9931)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/937466/007_Run1/mri/rawavg.mgz
volume geometry:
extent : (256, 256, 256)
voxel : ( 1.0000, 1.0000, 1.0000)
x_(ras) : (-1.0000, 0.0000, 0.0000)
y_(ras) : ( 0.0000, -0.0000, -1.0000)
z_(ras) : ( 0.0000, 1.0000, 0.0000)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/998106/007_Run1/mri/norm.mgz
Read individual LTAs
Warning: dst volume of lta1 doesn't match src volume of lta2
Volume geometry for lta1-dst:
Volume geometry for lta2-src:
Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2...
Writing combined LTA to file /cluster/work/jobs/998106/007_Run1/mri/orig/002-long.lta...
mri_concatenate_lta successful.
cp /cluster/work/jobs/998106/007_Run1/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1/mri/orig/001-iscale.txt /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri
mri_concatenate_lta /cluster/work/jobs/998106/007_Run1/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1_base/mri/transforms/007_Run1_to_007_Run1_base.lta /cluster/work/jobs/998106/007_Run1/mri/orig/001-long.lta
volume geometry:
extent : (160, 192, 192)
voxel : ( 1.2000, 1.2500, 1.2500)
x_(ras) : ( 0.9932, 0.1164, 0.0062)
y_(ras) : (-0.1149, 0.9865, -0.1168)
z_(ras) : (-0.0197, 0.1153, 0.9931)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/937466/007_Run1/mri/rawavg.mgz
volume geometry:
extent : (256, 256, 256)
voxel : ( 1.0000, 1.0000, 1.0000)
x_(ras) : (-1.0000, 0.0000, 0.0000)
y_(ras) : ( 0.0000, -0.0000, -1.0000)
z_(ras) : ( 0.0000, 1.0000, 0.0000)
c_(ras) : (-5.4783, -3.3362, 0.2429)
file : /cluster/work/jobs/998106/007_Run1/mri/norm.mgz
Read individual LTAs
Warning: dst volume of lta1 doesn't match src volume of lta2
Volume geometry for lta1-dst:
Volume geometry for lta2-src:
Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2...
Writing combined LTA to file /cluster/work/jobs/998106/007_Run1/mri/orig/001-long.lta...
mri_concatenate_lta successful.
mri_robust_template --mov /cluster/work/jobs/998106/007_Run1/mri/orig/002.mgz /cluster/work/jobs/998106/007_Run1/mri/orig/001.mgz --ixforms /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001.lta --average 1 --noit --template /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/rawavg.mgz --iscalein /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/002.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001.lta /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/orig/001-iscale.txt
7.1.0
--mov: Using /cluster/work/jobs/998106/007_Run1/mri/orig/002.mgz as movable/source volume.
--mov: Using /cluster/work/jobs/998106/007_Run1/mri/orig/001.mgz as movable/source volume.
Total: 2 input volumes
--ixforms: Will use init XFORMS.
--average: Using method 1 for template computation.
--noit: Will output only first template (no iterations)!
--template: Using /cluster/work/jobs/998106/007_Run1.long.007_Run1_base/mri/rawavg.mgz as template output volume.
--iscalein: Will use init intensity scales
ERROR: Number of filenames for --iscalein should agree with number of init LTAs (--ixforms)!
ERROR:
@#@FSTIME 2020:07:15:18:44:03 longmc N 5 e 1.50 S 0.39 U 0.15 P 36% M 2444 F 88 R 26931 W 0 c 339 w 32761 I 19328 O 14 L 31.75 31.67 31.64
@#@FSLOADPOST 2020:07:15:18:44:04 longmc N 5 31.75 31.67 31.64
Linux c5-31 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 007_Run1.long.007_Run1_base exited with ERRORS at Wed Jul 15 18:44:05 CEST 2020
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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