What is the error? You should be able to run through to the surface generation,
then only run the hemi you want
Cheers
Bruce
-----Original Message-----
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Alina Rojas
Sent: Monday, July 6, 2020 10:22 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Lesioned hemisphere
External Email - Use Caution
Hello Freesurfer experts,
I’m analyzing subjects with a stroke in one hemisphere. Problem: recon-all
breaks and gives an error at the white matter segmentation, what I understand.
I don’t need the data from the lesioned hemisphere, I need the cortical
thickness from the healthy one. Is there a possibility to only run one
hemisphere through freesurfer? Or to project the healthy one on to the lesioned
to have an intact brain and run recon-all succesfully?
Thanks,
Alina
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