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Thanks Juan.

Nevermind. It turns out that I was comparing a discrete segmentation 
done with v10 (Freesurfer v6 or older) with posterior probability maps 
obtained using v12 (Freesurfer 7.0) in the same subject.

The locations of the MGN and LGN segmentations have moved inferiorly in 
v12 compared to v10, but they match between the segmentation and the 
posterior probability maps in when using the same version, as they 
should. Other nuclei don't seem to have changed too much between v10 and 
v12.

Thanks again!

Julien



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