It looks like mri_ca_register failed to create the m3z. If this is
failing on 13 subjects, then there is something systematically wrong.
What kind of input do you have? Eg, MPRAGE? What is the resolution? Is
it whole brain?
On 5/19/2020 11:17 AM, Safi Ullah . wrote:
External Email - Use Caution
Dear Freesurfer,
Using Freesurfer version 7.1, I was running recon-all on 13 subjects,
using the command below
ls *.nii | parallel -jobs 8 recon-all -s {.} -I {} -all –qcache
(also checked with this one find . -name '*.nii' | parallel -j 8
recon-all -s {.} -i {} -all -qcache)
but each time i face the same error as attached with the mail.
I checked the transformation folder, but the said file, talairach.m3z,
is not there.
the error is not same for all cases, some cases showed a different
errors, stating "IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF
ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH:" as attached file
recon-all(2nd type).log
Regards
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