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Dear experts,


I began to test beta v7 version of FreeSurfer.


I noticed that some entries in recon-all-status.log seem missing (i.e. white 
and pial surface placement - there is entry Cortical Parc while following entry 
is Refine Pial Surfs).


Running 

samseg` --t1w $s/mri/T1.mgz --t2w $s/mri/T2.mgz --s $s --refmode t1w
exits with error in samseg2recon since command



set segvol = `find "$samsegdir" -iname "*crispSegmentation.nii" -print`


results with empty string set to segvol variable.


Antonin

 
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