check out this
http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat


On 1/31/2020 6:36 PM, Sam W wrote:

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Hello!
How can I get a transformation matrix that maps orig.mgz to rawavg.mgz? I only see examples bringing freesurfer results into original anatomical space with mri_vol2vol, but I really just want the transformation matrix.
Thanks!
Best regards,
Sam

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