[Freesurfer] RES: Re: freesurfer container - freeview error

[marcosm]

External Email - Use Caution         Hi, Arnaud. You can get the library you want installing a package for your Linux distribution. If you are using CentOS7 you can do this with the following command at terminal:   yum install mesa-libGLU   Remember you need to run this as root and pay attention to capital letters. If it is all you need, it should solve the error you pointed out. Perhaps, singularity will complain about other libraries. Just Google the library you need to find out the correct package you will have to install and repeat the procedure as necessary.   Good luck!   Enviado do Email para Windows 10   De: Arnaud Boré Enviado:sexta-feira, 17 de janeiro de 2020 17:32 Para: Freesurfer support list Assunto: Re: [Freesurfer] freesurfer container - freeview error           External Email - Use Caution         Hi,   Thank you for your quick response. Is there a way to have access to the definition of the official docker? I could also help to find which libraries are missing.   Thank you for help Arnaud   Le ven. 17 janv. 2020 12 h 00, Hoopes, Andrew <ahoo...@mgh.harvard.edu> a écrit : Hi Arnaud, If you want to forward graphics from singularity, you will probably need to install some extra libraries in the container. I've never actually tested this, so I'm not even sure that it's possible, but according to singularity's doc at https://singularity-tutorial.github.io you should at least try to install xorg and work from there. best Andrew ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Arnaud Boré <arnaud.b...@gmail.com> Sent: Friday, January 17, 2020 11:34 AM To: Freesurfer support list Subject: [Freesurfer] freesurfer container - freeview error         External Email - Use Caution Dear Freesurfer' experts, I've created a singularity container from the official docker hub freesurfer repository (https://hub.docker.com/r/freesurfer/freesurfer) When running: singularity exec freesurfer.sif freeview I get this error: freeview_bin: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No suche file or directory. I would like to know if this is something related to the containers or the host computer and some tips to fix this. I tested the singularity on different computers/laptops and ended up with the same error so I think there is an issue with the singularity/docker container. Thank you in advance Arnaud _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer