Hi Marianna
the skull stripping is a hybrid procedure that uses both a watershed
algorithm and a deformable surface. There is no single intensity threshold
in it. Maybe I'm misunderstanding your question? There are parameters you
can change (for example the preflooding height), but there is no intensity
thresholding
cheers
Bruce
On Wed, 16 Oct 2019, Inglese, Marianna
wrote:
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To whom it may concern,
I am using recon-all to segment many T1s. As I can see, one of the automatic
step performed by recon-all is the skull stripping. Would it be possible to
know the threshold used for the stripping? I guess it is the same threshold
everytime. I would like to apply the skull stripping only on other T1s and
need to get the same result.
Thank you very much for the help.
Yours faithfully,
Marianna Inglese
Research fellow, Imperial College London
Department of Surgery and Cancer
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