Hi Sara
we will need to know the actual commands and the screen output from them
that you ran
cheers
Bruce
On Mon, 14 Oct 2019, Sims, Sara A (Campus) wrote:
External Email - Use Caution
Freesurfers,
I am trying to use mri_mask using surface overlays. I made a label into a
volume and then into a surface with 1s inside the label and 0s outside the
label. I want to make a connectivity map surface overlay with values only
within my label overlay. However when I run it, it creates a surface overlay
with only zeros. There is definitely values within the label surface overlay
(I triple checked).
Code I used:
Mri_mask original_surface_overlay label_mask new_masked_output
It doesn’t output any errors.
Here is what it looks like in freeview:
Original surface overlay (label is outlined in green)
[IMAGE]
The label made into a surface overlay (same as the one shown in green
above):
[IMAGE]
But this is the output: all zeros even though there was data within the
mask.
[IMAGE]
Help!
Sara A. Sims
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
