External Email - Use Caution Dear Douglas,
Thank you very much for the help. We could solve the problem with that subject but now we have a similar problem with another subject. In the previous case, we have only one problematic voxel in the skull, but now the label 75 (it shouldn't exist either) is taking a lot of voxels in the ventricles and the caudate. So, I think that we should use other solution to fix it. I know that this issue is weird. We use gtmseg command with more or less 500 subjects and we only have this type of problem with two subjects. Best regards, Marina. > Probably the easiest thing is just to edit that voxel to be one of the neighboring > segments. First, load the aseg and find that voxel. See which segment(s) are around > that voxel and get the segmentation id. Then run > mri_binarize --replaceonly 229 YourNewSegID --i aparc+aseg.mgz --o > aparc+aseg.mgz > then re-run gtmseg
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