External Email - Use Caution Dear FS experts,
I want to upload neuroimaging data pre-processed by FreeSurfer's recon-all pipeline to a consortium server, and they require all data to be anonymized. I found mri_deface [1] and wondered which files I would have to apply it to, and whether there are any other things I should be aware of. So far, my plan is to use mri_deface to replace, for each subject, the following files in mri/: * orig.mgz * orig_nu.mgz * T1.mgz * rawavg.mgz It would also be an option to upload only a subset of all the files produced by FreeSurfer, but I do not know which files to exclude and include, so if you have suggestions for this, it would also be very welcome. I will also look at some public datasets to see how they did it. [1] https://surfer.nmr.mgh.harvard.edu/fswiki/mri_deface -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
