I don't know anything about fsleyes or fsl command to extract data. In FS, you can use mri_segstats after resampling the PET to the anatomical space (mri_vol2vol). Use the PET as the --i and the aseg+aparc as the --seg. Alternatively, you could use PETsurfer https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer
On 7/30/19 1:16 PM, Yang, Weiqi wrote: > > Dear FreeSurfers, > > > I would like to use fsleyes for imaging. Does anybody know how to > source it? > > > And what fsl command I should use if I want to extract all ROIs in > aparc+aseg file and get their uptake value from PET image? I know how > to do it for a single ROI. I am just wondering if there is an easy way > to extract data for all ROIs. > > > Thanks, > > Weiqi > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
