External Email - Use Caution
Thank you Anastasia,
I'll try and let you know.
Costanza
Il mer 5 giu 2019, 18:36 Yendiki, Anastasia <ayend...@mgh.harvard.edu> ha
scritto:
> Hi Costanza - When you use "\" in a shell script to continue a command
> onto the next line, make sure that the "\" is the very last character of
> the line (see second to last entry in your bvec list.
>
>
> On a separate note, you'll have to specify the bval file(s).
>
>
> Best,
>
> a.y
> ------------------------------
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Costanza Gianni' <
> costanza.gia...@uniroma1.it>
> *Sent:* Wednesday, June 5, 2019 9:27:12 AM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] running recon -all and trac -all from
> different FreeSurfer home
>
>
> External Email - Use Caution
>
> Hi Anastasia,
>
> I've attached the configuration file.
>
> Best,
> Costanza
>
> Il giorno mer 5 giu 2019 alle ore 15:07 Yendiki, Anastasia <
> ayend...@mgh.harvard.edu> ha scritto:
>
> Hi Costanza - can you please attach your configuration file?
>
> Best,
> a.y
> ------------------------------
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Costanza Gianni' <
> costanza.gia...@uniroma1.it>
> *Sent:* Wednesday, June 5, 2019 6:49:02 AM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* [Freesurfer] running recon -all and trac -all from different
> FreeSurfer home
>
>
> External Email - Use Caution
>
> Hello, FreeSurfer Developers,
>
> I'm trying to run trac -all (I prepared the configuration file following
> the instructions from v. 5.3) on a set of subjects already processed with
> recon -all in another computer with a different FREESURFER HOME, and I'm
> getting this error:
>
> Too many ('s.
> INFO: SUBJECTS_DIR is /home/costanza/extra/PET/PET
> INFO: Diffusion root is /home/costanza/extra/PET/PET
> Actual FREESURFER_HOME /home/costanza/freesurfer
> INFO: FreeSurfer build stamps do not match
> Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
> Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
> /home/costanza/freesurfer/bin/dmri_motion: Command not found.
> /home/costanza/freesurfer/bin/dmri_group: error while loading shared
> libraries: libnetcdf.so.6: cannot open shared object file: No such file or
> directory
> INFO: current FREESURFER_HOME does not match that of previous processing.
> Current: /home/costanza/freesurfer
> Previous:
> /autofs/cluster/mscat/users/caterina/3T/freesurfer-stable5_3_0-05152013
> dcmlist: Subscript out of range.
>
> I've searched the list and I couldn't find any similar error. Do you think
> the main problem is running commands from different FREESURFER HOME?
>
> 1) FreeSurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
> 2) Ubuntu 14.04.5 LTS
> 3) umane -a Linux wks4 3.13.0-166-generic #216-Ubuntu SMP Thu Feb 7
> 14:07:53 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
>
> Thanks a lot for your help,
>
> Costanza
>
> --
> Costanza Giannì, MD
> Radiologist
> PhD student
> Sapienza University, Rome
> +39 348 711 8987
>
>
>
> ___________________________________________
> *Il tuo 5 diventa 1000*
> Fai crescere la tua università
> Dona il 5 per mille alla Sapienza
> Codice fiscale: *80209930587*
>
> https://www.uniroma1.it/it/pagina/fai-crescere-la-tua-universita-con-il-cinque-mille
>
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>
>
>
> --
> Costanza Giannì, MD
> Radiologist
> PhD student
> Sapienza University, Rome
> +39 348 711 8987
>
>
>
> ___________________________________________
> *Il tuo 5 diventa 1000*
> Fai crescere la tua università
> Dona il 5 per mille alla Sapienza
> Codice fiscale: *80209930587*
>
> https://www.uniroma1.it/it/pagina/fai-crescere-la-tua-universita-con-il-cinque-mille
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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--
___________________________________________
*Il tuo 5 diventa 1000*
Fai
crescere la tua università
Dona il 5 per mille alla Sapienza
Codice
fiscale: *80209930587*
https://www.uniroma1.it/it/pagina/fai-crescere-la-tua-universita-con-il-cinque-mille
<https://www.uniroma1.it/it/pagina/fai-crescere-la-tua-universita-con-il-cinque-mille>
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