Can you upload the functional volume to ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming Let me know when it is there and what the file name is
On 4/16/19 5:55 PM, Mcnorgan, Christopher wrote: > > External Email - Use Caution > > Hi Doug, > > For some reason I’m having a problem replying to this list with my > reply to your reply. To recap: some of my functional runs are missing > the mcprextreg file, and so the GLM with the motion correction > parameters is failing. > > You had asked whether a mc-subjectname-bold.log file exists for these > data. These log files do exist, and I’ve tried a couple times to send > the log files (1MB attachment rejected). I’m including a google drive > link to one of the log files in the hopes that your offer still stands > to get to the bottom of why these files are reliably not being created > for some runs, while created for other runs collected during the same > session: > https://drive.google.com/open?id=17GLikK1mzY5uL52TyqlGK0Sa5N5Fy1KY > > We’ve been acutely aware of how many data frames are in each 4D volume > because the scanner has been incorrectly writing that all volumes are > 256 frames, though our self-paced experiment terminates earlier to > that. We accidentally found the fix to be to open up the header using > fsledithd, which then zero-pads the missing data frames until we have > 256. However this is the case for all runs, so that doesn’t explain > why only some runs are failing. > > Thanks, > Chris > > /********************************************** > * Chris McNorgan > * Assistant Professor > * Department of Psychology > * University at Buffalo, > * The State University of New York > * http://ccnlab.buffalo.edu/ > * Office: 716.645.0236 > * Lab: 716.645.0222 > **********************************************/ > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
