Are they exactly the same? Try
mri_diff file1.mgz file2.mgz
I would not expect them to be all that different, just a few voxels here 
and there

On 4/16/19 3:47 PM, Sam W. wrote:
>
>         External Email - Use Caution
>
> Hi,
> In a Freesurfer help webpage it says that to convert an image (eg 
> brain.mgz) from freesurfer to anatomical native space (eg rawavg.mgz) 
> we should use mri_vol2vol, but for a segmentation (aseg.mgz) we should 
> use mri_label2vol. I converted the aseg.mgz of bert using both vol2vol 
> and label2vol and found no difference - The resulting output images 
> look exactly the same. Is there really an advantage of using label2vol 
> instead of vol2vol?
> Thanks!
> Sam
>
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