External Email - Use Caution No, we didn't have the same problem neither with Freesurfer 6.0 or with the development Freesurfer version. The problem only arises when we display FS images with Freeview using Freesurfer (6.0 or development version). For that reason, I asked you about issues installing Freeview, or wrong interaction between Ubuntu and Freeview. Any suggestion?
El jue., 31 ene. 2019 a las 16:30, Ruopeng Wang (<rpw...@nmr.mgh.harvard.edu>) escribió: > That’s unlikely. Did FS 6.0 have the same problem? > > On Jan 31, 2019, at 9:59 AM, Laboratorio de Neurociencia Funcional < > neuroaging...@gmail.com> wrote: > > External Email - Use Caution > > Hi Ruopeng, > > we have tried these commands with Bert and with different datasets and the > problem persists. Could the problem be related to the way that we have > installed Freeview or something wrong between Freeview and the Ubuntu > version that we are using (16.04 TLS)? > > Best, > Jose > > El jue., 31 ene. 2019 a las 15:32, Ruopeng Wang (< > rpw...@nmr.mgh.harvard.edu>) escribió: > >> Your screenshot appears to be from burt data but I assume it was loaded >> with similar commands. I could not replicate the displacement with burt >> data. Would it be possible to send me T1.mgz and lh.white file from this >> OSM_0 subject? >> >> Thanks, >> Ruopeng >> >> >> On Jan 31, 2019, at 9:18 AM, Laboratorio de Neurociencia Funcional < >> neuroaging...@gmail.com> wrote: >> >> External Email - Use Caution >> >> Sure, commands are copied below: >> >> *File > Run Command* >> >> *-v /usr/local/freesurfer/subjects/OSM_0/mri/T1.mgz* >> >> *-v /usr/local/freesurfer/subjects/OSM_0/mri/brainmask.mgz* >> >> *-**f >> /usr/local/freesurfer/subjects/OSM_0/surf/lh.white:edgecolor=yellow* >> >> *-f /usr/local/freesurfer/subjects/OSM_0/surf/lh.pial:edgecolor=red* >> >> *-f /usr/local/freesurfer/subjects/OSM_0/surf/rh.white:edgecolor=yellow* >> >> *-f /usr/local/freesurfer/subjects/OSM_0/surf/rh.pial:edgecolor=red* >> >> Looking forward your comments. >> >> Best, Jose >> >> El jue., 31 ene. 2019 a las 14:39, Ruopeng Wang (< >> rpw...@nmr.mgh.harvard.edu>) escribió: >> >>> Can you share the freeview command you run to load the these data? >>> >>> Ruopeng >>> >>> On Jan 31, 2019, at 7:31 AM, Laboratorio de Neurociencia Funcional < >>> neuroaging...@gmail.com> wrote: >>> >>> External Email - Use Caution >>> >>> Dear Freesurfers, >>> >>> we have installed the updated Freeview version in the development >>> version of Freesurfer (Centos 6, 18 january build), but Bert images appear >>> displaced when they are loaded with this version of Freeview. The same >>> displacement occurs when other dataset is used. Please find attached a >>> screenshot to display the issue. Would you please help me to solve the >>> problem? >>> >>> Thank you in advance. >>> >>> Best, >>> Jose >>> <Image displacement_Freeview.png> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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