External Email - Use Caution Hi ,
The following command worked fine under 5.3.0 recon-all -openmp 88 -sd LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer -base template_baseline_1 -tp baseline -tp 1 -all but now it produces there error ERROR: It appears that the -base templateID that you passed: -base template_baseline_1 is an existing regular (cross sectional) run! Please make sure you pass a new name (not one of the time points) for the template with -base. For example, if you are trying to create a -base: \' -base BertTemplate -tp Bert1 -tp Bert2 ... \' There is no existing regular (cross sectional) run. Do you know what the issue is ? The only dirs in LAB_S00308/standard/20161209_2776_12092016/structural/longitudinal/freesurfer are lrwxrwxrwx 1 djk root 100 Jan 28 10:29 1 -> ../../../../20161209_2776_12092016/structural/freesurfer6/LAB_S00308_standard_20161209_2776_12092016 lrwxrwxrwx 1 djk root 100 Jan 28 10:29 baseline -> ../../../../20080725_3594_07252008/structural/freesurfer6/LAB_S00308_standard_20080725_3594_07252008 drwxr-xr-x 3 djk root 23 Jan 28 10:29 template_baseline_1 Thanks Kilian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
