You will have to put the cerebellar surface in fsaverage/surf/lh.cerebellum Note use "lh" even if it is the entire cerebellum as FS commands generally require a hemisphere. The run mri_vol2surf specifying --hemi lh --surf cerebellum
On 1/23/19 10:04 AM, john Anderson wrote: > > External Email - Use Caution > > Dear FS experts, > I ran surface based PET analysis on subcortical regions. Then > corrected the results for multiple comparisons using the method --grf > in the command mri_glmfit-sim. > > I can visualize the output of multiple comparisons (i.e. the file > grf.th1.3.pos.sig.cluster.mgh) on volume using tkmedit, this > statistical map shows difference between the groups in the > cerebellum.... Instead of visualizing the results on volume, I want to > move this file to the cerebellum surface. I already created the > cerebellum surfaces from aseg.mgz file in fsaverage using the command > mris_tesselate. > > How can I move the the file grf.th1.3.pos.sig.cluster.mgh from volume > space and map it on the cerebellum surface? > > I tried mri_vol2surf but this command requires the flag --hemi as a > result it will map the file "grf.th1.3.pos.sig.cluster.mgh" on > cerebral hemispheres (lh or rh) but not the cerebellum.. > How can I map the file "grf.th1.3.pos.sig.cluster.mgh" on the > cerebellum surface? > > Thanks for any suggestions, > John > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
