Not for cortical analysis. You might be able to get something useful 
from subcortical analysis

On 1/22/19 12:15 PM, Sahnoune,Iman wrote:
>
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> Hello,
>
> I’m writing to ask whether clinical scans with thickness of 5mm are 
> currently able to be analyzed using Freesurfer? This question has been 
> asked in the archives, but it has been about 5 years so just writing 
> to see whether that has changed or if a work around has been 
> developed. Alternatively, the option exists to computationally make 
> the slices thinner. Would running the software either as 5mm or 
> thinner slices yield accurate and useful information cortically and 
> subcortically?
>
> Thank you in advance for your help.
>
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