External Email - Use Caution Hi Dr. Greve,
I found out the reason why it does not work. That was because the subjects' folder does not include lh white.K. Thank you so much! Tadashi Shiohama -----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Greve, Douglas N.,Ph.D. Sent: Friday, January 4, 2019 4:21 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] -qcache error Does that file exist? If not, check to see whether that subject finished or whether there was an error On 12/20/18 2:37 PM, 塩浜 直 wrote: > External Email - Use Caution > > Hello FreeSurfer Developers, > > I'm attempting to do group analysis for cortical thickness map using Qdec GUI. > We've already have recon-all files that were made by “recon-all –s > subjid –i subjid.nii –all” on other Linux OS > (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) > > Firstly, I try to run command “recon-all –s subject –qcache” for each subject > floders. > However, the program stopped with error 1 minutes after starting. > Last line of recon-all.log showed as follows. > > #@# Qdec > Cache preproc lh white.K fsaverage Thu Dec 20 12:03:25 EST 2018 > /Users/emitakahashi/freesurfer/subjects/ASD001/surf > \n > mris_preproc --s ASD001 --hemi lh --meas white.K --target fsaverage > --out lh.white.K.fsaverage.mgh \n nsubjects = 1 > ERROR: > cannot find > /Users/emitakahashi/freesurfer/subjects/ASD001/surf/lh.white.K > Darwin > emis-mbp.tch.harvard.edu 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug > 22 > 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64 > > I've searched the list but I can find no similar errors have been > reported. Does anyone have any thoughts on how to trouble-shoot this > one? Also, Ive attached the recon-all.log in case it's of any use. > 1) FreeSurfer version: Free Surfer 6.0 > 2) Platform: macOS Mojave (64b Intel) > 3) recon-all.log: see attached > > Tadashi Shiohama > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
