did you try to load it as a surface? If you want to upload the entire
subject dir (tarred and gzipped) to our ftp site we will take a look. In
the meantime you can also just post an image of the volume in 3 planes,
that might help
cheers
Bruce
On Fri, 21 Dec 2018, 허정선 wrote:
External Email - Use Caution
Thank you for your reply.
Is it impossible with 2mm? Unfortunately, the data we collect for the study all have same thickness of voxel.
And, there was a problem like the photo below, and only the recon-all.log could be attached to you.
Thanks,
Jeongson
----------------------------------------------------------------------
Message: 1
Date: Thu, 20 Dec 2018 10:13:16 -0500 (EST)
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] recon-all error : Too many intersected faces
for face 120047 (60827, 60826, 59444)
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Message-ID:
<alpine.lrh.2.20.1812201012130.17...@gate.nmr.mgh.harvard.edu>
Content-Type: text/plain; charset="utf-8"
Hi Jeongson
it certainly looks like something went badly wrong. 2mm may be too thick
- we typically recommend <=1.5mm for any voxel direction. Can you send us
the recon-all.log? And maybe a snapshot of the volume with the
lh.orig.nofix and rh.orig.nofix overlaid?
cheers
Bruce
On Thu, 20 Dec
2018, ??? wrote:
External Email - Use Caution
Hello Freesurfer developers
I'm starting using FS and I have a problem running recon-all.
#recon-all -s /usr/local/freesurfer/subjects/20180108 -all
I've attached the output to a ERROR image file.
We're doing on a GE scanner 3T, T1-FSPGR axial slices, 3D with a slice
thickness of 2.0mm.
freesurfer version : freesurfer-x86_64-unknown-linux-gnu-stable6-20170118
Any help is greatly appreciated.
Thanks.
Jeongson
------------------------------
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