what is your $MATLAB variable set to? It should be set to the matlab 
executable

On 11/30/2018 01:30 PM, Emily Levin wrote:
>
>         External Email - Use Caution
>
> Hi FreeSurfer experts,
>
> I'm trying to run mkcontrast-sess using the newest development version 
> of freesufer from Nov 30th, 2018, and I am getting a matlab permission 
> denied error (see mkcontrast-sess_error text file).
>
> It seems to be happening around line 150-160 of mkcontrast2. However, 
> when I copy the old mkcontrast-sess and mkcontrast2 scripts from 
> freesurfer 6.0.0 (non-development version), it works fine in the 
> development version.
>
> The two versions in question are the stable release 6.0.0 and the 
> development release for centos7 Nov 30th, 2018.
>
> Any insight into why I'm getting permission denied would be really 
> helpful. There don't seem to be any changes between the two scripts so 
> I'm a little confused.
>
>
> Thanks,
> Emily
>
>
>
> -- 
> Emily J. Levin
> Lab Manager
> Attention & Perception Neuroimaging Lab
> Boston University
> Lab: 617-358-1737
>
>
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> Freesurfer@nmr.mgh.harvard.edu
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