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Dear freesurfer experts,
I want to calculate functional connectivity between two seeds with
freesurfer-linux-centos6_x86_64_stable_pub-v6 . after using fcseed-config
and fseed-sess commands, I use fcseedcor command. the command that I trying
to run is as follow:
fcseedcor -s subj1 -fsd rest -seed lh-seed2.dat -seed lh-seed3.dat -xreg
wm.dat 5 -xreg vcsf.dat 5 -xreg mcprextreg 6 -hpf .001 -lpf .1 -nskip 6 -o
seedcor2.dat
but the output of fcseedcor is not .dat file ( the connectivity matrix for
my result 2*2 matrix) as it has been explained in the fcssedcor help. the
output is just the .log file named seedcor2.dat.log. although it has been
done without error:
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
$Id: fcseedcor,v 1.3 2015/12/10 22:51:29 zkaufman Exp $
Linux localhost.localdomain 2.6.32-642.el6.x86_64 #1 SMP Tue May 10 17:27:01
UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
------- matlab output --------------------
matlab: Command not found.
Started at Sat Dec 1 18:05:11 IRST 2018
Ended at Sat Dec 1 18:05:12 IRST 2018
Fcseedcor-Run-Time-Sec 1
Fcseedcor-Run-Time-Hours 0.00
fcseedcor Done
I really dont know what is the problem.
I would be grateful if you could help me.
best regards ,
sara
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