External Email - Use Caution Nope, please don't rerun the recon-all with dev. Just run the hippo+amyg module on the 6.0-reconned data. Cheers, /Eugenio
-- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University College London, and Research Affiliate Computer Science and Artificial Intelligence Laboratory (CSAIL) Massachusetts Institute of Technology http://www.jeiglesias.com On 30/11/2018, 09:13, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of ts...@rcmd.org" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of ts...@rcmd.org> wrote: External Email - Use Caution Dear FreeSurfer experts, we would like to use the 'Segmentation of hippocampal subfields and nuclei of the amygdala' feature [1] that is available in the development version of FreeSurfer. However, we already pre-processed all subjects from the study using recon-all from FreeSurfer v6.0 stable. Can we apply the hippocampal subfields methods to the data pre-processed with the stable version, or should we run recon-all again using the dev version before we proceed? Thanks, Tim [1] https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
