External Email - Use Caution Thanks for your help :) Going on with the use Free Surfer!!
Regards, Rosalia El dom., 18 nov. 2018 17:11, Bruce Fischl <fis...@nmr.mgh.harvard.edu> escribió: > overlay the white and pial surfaces and see if the skull is included > inside > the pial > > On Sun, 18 Nov > 2018, Rosalia Dacosta Aguayo wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > Thank you a lot for your reply. How could I inspect if affects the > surfaces? > > > > Yours sincerely, > > Rosalia > > > > > > El dom., 18 nov. 2018 16:58, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > escribió: > > that should work ok. It only matter if it affects the surfaces > though (or > > the aseg) > > cheers > > Bruce > > > > On Sun, 18 Nov 2018, Rosalia Dacosta Aguayo wrote: > > > > > > > > External Email - Use Caution > > > > > > Hi Bruce, > > > Sorry for my intromission. > > > I am replacing the brainmask because dura mater or skull were > left behind with > > independence of the > > > WM and GM segmemtation. Does this is useless? > > > > > > Regards, > > > Rosalia > > > > > > El dom., 18 nov. 2018 16:16, Bruce Fischl < > fis...@nmr.mgh.harvard.edu> escribió: > > > Hi yujunjie > > > > > > you need to look at the *.nofix surfaces and see where the > defect is. > > > Skull and neck being left is around isn't a problem unless > they are > > > included in the surfaces. > > > > > > cheers > > > Bruce > > > On Sun, 18 Nov 2018, 1013364183 wrote: > > > > > > > > > > > External Email - Use Caution > > > > > > > > Dear Bruce Fischl, > > > > Thank you very much for your reply. I checked the > effect of going down the > > skull and > > > found that a > > > > large part of the skull has not been removed. The > appendix contains images of > > skull > > > removal. I want > > > > to know how we should handle it. > > > > > > > > yours yujunjie > > > > ------------------ Original ------------------ > > > > From: "Bruce Fischl"<fis...@nmr.mgh.harvard.edu>; > > > > Date: Sun, Nov 18, 2018 00:10 AM > > > > To: "Freesurfer support list"< > freesurfer@nmr.mgh.harvard.edu>; > > > > Subject: Re: [Freesurfer] Modify defect failed > > > > > > > > Hi yujunjie > > > > > > > > the last entry in the log file is: > > > > > > > > CORRECTING DEFECT 5 (vertices=53772, convex hull=1434, > v0=15308) > > > > XL defect detected... > > > > > > > > > > > > this is a giant defect - about 1/4 of your total > surface. It means that > > > > something major went wrong - skull attached, or hemis > connected or > > > > something. You should look at the rh.orig.nofix and the > > > > rh.inflated.nofix surfaces to see what it is. > > > > > > > > cheers > > > > Bruce > > > > > > > > > > > > On Sat, 17 > > > > Nov 2018, 1013364183 wrote: > > > > > > > > > > > > > > External Email - Use Caution > > > > > > > > > > Dear FS, > > > > > I ran the recon-all command and it failed to fix it > for many days when I > > fixed the > > > defect. I have > > > > > modified the threshold of the split algorithm. I want > to know if there are > > other > > > ways to fix the > > > > Its > > > > > log file is in the attachment. > > > > > > > > > > Thank you in advance > > > > > > > > > > yours yujunjie > > > > > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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