Hi Valeria that means there is a mismatch between the surface overlay and the surface. Maybe you sampled:
/autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh to the surface then recreated the surfaces after editing? cheers Bruce On Mon, 5 Nov 2018, Barletta, Valeria wrote: > Dear FreeSurfers, > I am trying to apply surface processes to concatenate my cohort, but for some > subjects I am getting this error: > > mri_surf2surf --srcsubject Ctrl034_R01_07 --srchemi rh --srcsurfreg > sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg > --tval > /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/T1/allSubj/tmp.mris_preproc.61312/Ctrl034_R01_07.18.mgh > > --sval > /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh > > --noreshape --no-cortex ERROR: dimension inconsistency in source data > Number of surface vertices = 138446 > Number of value vertices = 137970 > Source registration surface changed to sphere.reg > Target registration surface changed to sphere.reg > srcsubject = Ctrl034_R01_07 > srcval = > /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh > srctype = > trgsubject = fsaverage > trgval = > /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/T1/allSubj/tmp.mris_preproc.61312/Ctrl034_R01_07.18.mgh > trgtype = > srcsurfreg = sphere.reg > trgsurfreg = sphere.reg > srchemi = rh > trghemi = rh > frame = 0 > fwhm-in = 0 > fwhm-out = 0 > label-src = (null) > label-trg = (null) > OKToRevFaceOrder = 1 > Reading source surface reg > /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/rh.sphere.reg > Loading source data > > > And the script running stops immediately after. I already tried to relaunch > the -autorecon2 -autorecon3 command for those subjects, since we > already had this kind of issue in the past, but it didn't work. > Do you have any idea of what could be the problem? > Thank you very much, > Valeria > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
