Hi Rosaila
usually when you have a defect that large (>30,000) vertices, which is
about 1/4 of the total surface more or less, something is dramatically
wrong and it is not worth waiting for it to finish (it might take days or
weeks). Examine the ?h.orig.nofix and ?h.inflated.nofix surfaces and see if
there is some big problem like skull or cerebellum attached to the surface.
cheers
Bruce
On Mon, 22 Oct 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Dear FreeSurfer team,
I Have run -autorecon1 in my sample and the report.log was "finished without
errors"
Now, running recon-all -all I have seen that a participant is stuck in
CORRECTING DEFECT 0
(vertices=31977, convex hull=5359, v0=0) for more than an hour. I wonder if
this is normal or if I
should be worried because recon-all takes 4.5 hours approximately for every
participant but for this
one, it seems that is not moving from this step.
Anyone could help me with this?
Best regards,
Rosaila
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