You’re attempting to build the dev version of freesurfer, in which case you
should follow the build instructions on this page -
https://surfer.nmr.mgh.harvard.edu/fswiki/BuildGuide. If you’d like to build
freesurfer 6, you’ll have to checkout the "stable6" git branch before running
setup_configure.
Andrew
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Jennewein, Douglas
M" <doug.jennew...@usd.edu>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, October 5, 2018 at 2:07 PM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Error running setup_configure
External Email - Use Caution
We are attempting to build Freesurfer 6 on CentOS 7 x76_64.
After cloning the git repo we see the following when running ./setup_configure
configure.in:3866: the top level
Makefile.am: error: required file './NEWS' not found
Makefile.am: error: required file './AUTHORS' not found
Makefile.am: error: required file './ChangeLog' not found
automake: warning: autoconf input should be named 'configure.ac', not
'configure.in'
Makefile.am:27: error: required directory ./mri_warp_concat does not exist
The folder mri_warp_concat/ does not exist in the cloned directory, and does
not appear to exist in the github repo
online<https://github.com/freesurfer/freesurfer> either.
How can we build Freesurfer 6 from source on CentOS 7?
Thank you
Doug Jennewein
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