External Email - Use Caution Actually, I was able to match the boundaries with the referenced publication. So it's all good, thanks again for your help!
Vinny On Mon, Sep 10, 2018 at 6:55 PM Vinny K <vinit.k.srivast...@gmail.com> wrote: > Hi Eugenio, > > Thank you for your reply. Somehow the display from my thalamic > segmentation does not capture the colors in your publication and > furthermore, the nuclei are not clearly delineated from each other visually > since one color may encompass two or three different nuclei. However, I > see the label numbers ranging from 8100 to 8300 when hovering my mouse over > the segmented thalamus and also these numbers change within the same color > meaning that delineation does in fact exist; these new label numbers are > different from the 14 FreeSurferColorLut.txt thalamic labels. Is there a > table that links these new label numbers with the names of the 26 thalamic > nuclei? > > Thanks again for your help, > > Vinny > > On Mon, Sep 10, 2018 at 1:36 PM Iglesias Gonzalez, Eugenio < > e.igles...@ucl.ac.uk> wrote: > >> External Email - Use Caution >> >> Hi Vinny, >> The anatomical definitions can be found in the paper, which is open >> access (see Table 2): >> https://www.sciencedirect.com/science/article/pii/S1053811918307109 >> Kind regards >> Eugenio >> >> >> >> Sent from my phone, please excuse brevity and typos >> >> >> >> >> >> >> From: Vinny K >> Sent: Monday, September 10, 10:35 >> Subject: Re: [Freesurfer] thalamic segmentation >> To: freesurfer@nmr.mgh.harvard.edu >> >> >> External Email - Use Caution >> Hi, >> >> I ran recon-all to generate the required files for the thalamic >> segmentation tool (http://freesurfer.net/ >> <http://freesurfer.net/fswiki/ThalamicNuclei>fswiki >> <http://freesurfer.net/fswiki/ThalamicNuclei>/ >> <http://freesurfer.net/fswiki/ThalamicNuclei>ThalamicNuclei >> <http://freesurfer.net/fswiki/ThalamicNuclei>) using the latest >> development version of Freesurfer (06/09/2018) linux-cent06. The segmented >> thalamic nuclei were visualized but I could not find a table listing the >> thalamic nuclei and its associated label to help identify the specific >> nuclei. >> >> Any help would be greatly appreciated. >> >> Thanks, >> >> Vinny >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >
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