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Dear FreeSurfer experts,
I have used "mri_annnotation2label" and "mri_label2vol" to change the
parcellation output of FreeSurfer e.g the lh.aparc.annot into an ".nii" so i
can see the parcels in Mricro.
Now I can see the parcels just on the cortex not on the whole graymatter.
The first question I have is that, is the parcellation done on the whole
graymatter?
And if yes, is there a way that I can see the volumes on the whole
graymatter, not just on the cortex?
I would be grateful if you could help me.
best regards,
Maedeh,
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