Hi Alex
you have to identify what is causing it first. There should be an overlay
named ?h.defect_labels that you can load on the ?h.inflated.nofiex surface
to find defect 31, then go into the volume and see what is causing it
(skull attached, etc...)
cheers
Bruce
On Tue, 7 Aug 2018, Rockhill,
Alexander P. wrote:
Hi all,
I am running recon-all and the command is stuck on the output
CORRECTING DEFECT 31 (vertices=8161, convex hull=3290, v0=29848)
XL defect detected...
It has been on that step overnight. Is there some way to ignore the defect
or correct it without
taking so long?
This is using freesurfer 6.
Thanks,
Alex Rockhill
Translational NeuroEngineering Laboratory
Division of Neurotherapeutics, Department of Psychiatry
Massachusetts General Hospital, Martinos Center
149 13th St Charlestown #2301, Boston, MA 02129
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