Hi John you can try a morphological close using mri_morphology.
cheers Bruce On Thu, 2 Aug 2018, John Anderson wrote:
External Email - Use Caution Dear Freesurfer experts, I would like to inquire whether there is (are) any command(s) in FS6.0 that can help to fill holes in a brain mask without dilating it? I would appreciate any advice, John
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.