Hi Sofia
you should be able to "reslice like" the rawavg.mgz:
mri_convert -rl rawavg.mgz brainmask.mgz brainmask.rawavg.mgz
you might also want to specify the interpolation as e.g. nearest with -rt
nearest (trilinear is the default I believe)
On Tue, 24 Jul 2018,
Sofia Rodriguez Penuela wrote:
External Email - Use Caution
Hello team,
We have first fixed non-cortex voxels in the pial surface using the
brainmask.mgz volume, and we next corrected pial surfaces that mistakenly
included cerebellum by creating a copy of 'brain.finalsurfs.mgz' named
'brain.finalsurfs.manedit.mgz' and erase problematic voxels in it . All
these changes appeared correctly in brain.finalsurfs.mgz after running
autorecon–pial in the two steps.
How could I get a .nii file containing all these changes in the native space
(0.65x0.65x0.65)?
Thank you!
--
Sofía Rodríguez Peñuela, Técnico de Laboratorio.
Laboratorio de Neurociencia Funcional
Departamento de Fisiología, Anatomía y Biología Celular.
Universidad Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Sevilla
- España -
Movil: 627273085
Email: srod...@upo.es
http://www.upo.es/neuroaging/es/
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