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Just wondering if anyone had any advice regarding this problem? I am still struggling to get things running as intended! Any help would be greatly appreciated. BW James On Tue, Jun 26, 2018 at 1:20 PM, James Hobart <jameshoba...@gmail.com> wrote: > Hi Freesurfer community, > > > > I have an issue in adding a surface label to an annot file. > > I had a manually drawn .nii mask in native space for each subject which > I have used mri_vol2surf to create a surface overlay and then mri_vol2label > (with the surf argument) to create a surface label for the mask. > > > > I also have a custom parcellation of fsaverage which I have mapped to > individual native space using mri_surf2surf. > > > > My issue is I want to combine the outputted binarymask.label file with the > custom parcellation. My understanding is that I would need to combine the > binarymask.label with the custom.parc.annot file. In order to do this > wopuld I break down the annot file with mri_annot2label and then rebuild > including the new binarymask.label? > > > > Could I also just add another row to the LUT from the custom.parc.annot > file to allow this? > > > > And finally, how do I deal with the fact that the binarymask.label will > overlap with other labels? Ideally I need to force the overwrite of vertex > labels so that the binarymask.label is prioritised? > > > > BW > > James >
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