Yes, 3 is p<.001, which is converted to a z before thresholding the map. Note that we are trying to push people to use permutation instead of MC.
On 07/09/2018 05:22 PM, Dincer, Aylin wrote: > > > Hi FreeSurfer experts, > > > I am trying to understand the Monte Carlo Z simulation in FreeSufer > (/mri_glmfit/-/sim/) and have a question about the vertex wise > /cluster forming threshold. > > > In the simulation, a vertex wise threshold (ex. -cache 3 abs) is set > and the threshold is applied to a z map. Is the 3 threshold (p value > of 0.001) converted to a z score using the z table before it is > applied to the map? > > > Thanks! > > Aylin > > ------------------------------------------------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If > you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying or the taking of any action in reliance on > the contents of this information is strictly prohibited. If you have > received this email in error, please immediately notify the sender via > telephone or return mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
