External Email - Use Caution
Bruce,
What does "del" mean in the --projdist-avg flag?
Sara Sims
Graduate Research Fellow
University of Alabama at Birmingham
Department of Psychology
205-975-4060
sno...@uab.edu
On 6/26/18, 2:49 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
fis...@nmr.mgh.harvard.edu> wrote:
Hi Sara
check out the help (with --help). For example you could use:
--projdist-avg min max del : average along normal
cheers
Bruce
On Tue, 26 Jun
2018, Sims, Sara A wrote:
> External Email - Use Caution
>
> Bruce,
> Thanks! So if I set it to say 4mm would it sample from 0-4mm or just from
exactly 4mm and ignore things slightly closer to the surface?
> My problem would be somethings could be 2mm or 3mm etc. and it's not
exactly the same all the way around the brain.
>
> Sara Sims
> Graduate Research Fellow
> University of Alabama at Birmingham
> Department of Psychology
> 205-975-4060
> sno...@uab.edu
>
> On 6/26/18, 2:27 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Bruce Fischl" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
fis...@nmr.mgh.harvard.edu> wrote:
>
> Hi Sara
>
> you can use a negative projdist in mri_vol2surf
>
> cheers
> Bruce
> On Tue, 26 Jun 2018, Sims,
> Sara A wrote:
>
> >
> > External Email - Use Caution
> >
> > Hello,
> >
> > I have outputs from FSL probtrackx that I would like to display on
Freesurfer surfaces. If I
> > put the volume into freesurfer space how can I get it to sample onto
a surface when the
> > values are in white matter and not grey matter? To rephrase, how can
I pull data from white
> > matter (just below the grey matter) and display it on a surface?
> >
> >
> >
> > Many thanks,
> >
> > Sara
> >
> >
> >
>
>
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