External Email - Use Caution Hi Dan,
The mesh can be rasterized in its reference space, but such does not correspond to any volumetric image. Cheers, /Eugenio Juan Eugenio Iglesias Centre for Medical Image Computing (CMIC) University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of djpet...@u.washington.edu <djpet...@u.washington.edu> Sent: Wednesday, May 30, 2018 10:51:38 PM To: Freesurfer support list Subject: Re: [Freesurfer] midbrain mask in standard-space? External Email - Use Caution The "brainstem pipeline" described here: https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures Thanks! -Dan On Wed, 30 May 2018, Bruce Fischl wrote: > Hi Dan > > which brainstem atlas do you mean? > > cheers > Bruce > > > On Wed, 30 May 2018, > djpet...@u.washington.edu wrote: > >> External Email - Use Caution >> >> Hi Freesurfer email list, >> >> I'm trying to get the midbrain mask from the brainstem segmentation >> pipeline into standard space, for use in analyzing some data in other >> modalities. I have labeled T1s in individual-space (it's a longitudinal >> pipeline). Does the brainstem atlas already exist somewhere in >> MNI-space as a mask? If so, where could I find it? I've found the ROI >> mesh data, but I don't know how to convert that into a voxel mask. >> >> Thanks so much, >> -Dan Peterson >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
