I'm not sure what you mean. You can just use freeview to load the aseg. Or do you want all the non-STV removed? If that, you can create a mask of STV using mri_binarize and --match run on the aseg.mgz, then use mri_mask aseg.mgz stvmask.mgz aseg-stvonly.mgz
On 05/30/2018 11:56 AM, James Gullickson wrote: > > > All, > > Is there any way to graphically visualize the segmentations for > SupraTentorialVol and SupraTentorialVolNotVent, for example in > freeview or tkmedit? Based on the descriptions I have read for the > supratentorial values, I want to use them for an analysis. However, I > would like to visualize them in my data set for QA purposes to ensure > they are capturing what I think they are capturing. > > Thanks, > > James > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
