Hi Ritesh your best bet is to run everything normally, then convert the output to whatever format/orientation/voxel size you want
cheers Bruce On Thu, 10 May 2018, Ritesh Mahajan wrote: > External Email - Use Caution > > Thank you Bruse. Actually i converted the input into RAI orientation using > mri_convert --out_orientation and gave RAI input the free-surfer through > recon-all. The results are not generated. > > My goal is to run free-surfer with RAI orientation and result should be in > RAI. I also want the output of free-surfer with dimensions as 128*128*128 and > spacing as 2,2,2 mm. > > Can you tell whether this can be done using free-surfer? > > Thanks, > Ritesh Mahajan > > ----- Original Message ----- > From: "Ritesh Mahajan" <ritesh.maha...@ripl.ricoh.com> > To: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> > Sent: Thursday, May 10, 2018 1:44:40 PM > Subject: run recon all with forced orientation, spacing and dimension > > External Email - Use Caution > > Hello Team, > > As i know free-surfer generates the output with following: > 1) Dimensions : 256*256*256 > 2) Spacing : 1, 1,1 mm > 3) Orientation : LIA > > Is there any way to run free-surfer with user specified orientation, spacing > and dimension ? > > Thanks, > Ritesh Mahajan > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
