External Email - Use Caution Ûghrf7f77f7f7ef
On Thu, May 3, 2018, 19:32 Matthew Grecsek <m...@grecsek.com> wrote: > External Email - Use Caution > > I'm using the following flags on my recon -all: -mprage -time -multistrip > -subcortseg > > and getting the following errors at this section of the log file: > > mri_watershed -rusage > /Users/Matthew/Downloads/matt/mattmp/touch/rusage.mri_watershed.dat > -brain_atlas > /Applications/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca > transforms/talairach_with_skull.lta -h 5 T1.mgz brainmask_T1_PFH5.auto.mgz > \n > \n mri_watershed -rusage > /Users/Matthew/Downloads/matt/mattmp/touch/rusage.mri_watershed.dat > -brain_atlas > /Applications/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca > transforms/talairach_with_skull.lta -h 10 T1.mgz > brainmask_T1_PFH10.auto.mgz \n > \n mri_watershed -rusage > /Users/Matthew/Downloads/matt/mattmp/touch/rusage.mri_watershed.dat > -brain_atlas > /Applications/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca > transforms/talairach_with_skull.lta -h 20 T1.mgz > brainmask_T1_PFH20.auto.mgz \n > \n mri_watershed -rusage > /Users/Matthew/Downloads/matt/mattmp/touch/rusage.mri_watershed.dat > -brain_atlas > /Applications/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca > transforms/talairach_with_skull.lta -h 30 T1.mgz > brainmask_T1_PFH30.auto.mgz \n > > mri_watershed -rusage > /Users/Matthew/Downloads/matt/mattmp/touch/rusage.mri_watershed.dat > -brain_atlas > /Applications/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca > transforms/talairach_with_skull.lta -h 5 orig.mgz > brainmask_orig_PFH5.auto.mgz > > > Mode: Use the information of atlas (default parms, --help for > details) > Mode: Preflooding height manually specified > dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: ___emutls_get_address > Referenced from: > /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > [... more of same ...] > > WARNING: Some multi-skullstrip operations may have failed! > Continuing multi-skullstrip with the others... > ERROR: failure in calculating best preflood height param. > Darwin Matthews-MacBook-Air.local 17.5.0 Darwin Kernel Version 17.5.0: Mon > Mar 5 22:24:32 PST 2018; root:xnu-4570.51.1~1/RELEASE_X86_64 x86_64 > > recon-all -s mattmp exited with ERRORS at Thu May 3 12:57:24 EDT 2018 > > Attached is my log file for reference. Any suggestions appreciated. > > Cheers, > > -Matt > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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