External Email - Use Caution Hello Rob,
No, I mean the dmri_train binary that is part of Tracula. The main source file is ./freesurfer/trc/dmri_train.cxx. I don’t mind building the whole tree if necessary, but I haven’t been able to do so either. Do you know what the -r flag to make does? Thank you, Ruy > On May 2, 2018, at 6:51 PM, Dicamillo, Robert <rdicami...@mgh.harvard.edu> > wrote: > > Hello Ruy, > > Do you mean the mri_train binary that gets built under ./freesurfer/mri_train > ? > (I see a ./freesurfer/dmri_poistats, ./freesurfer/dmri_tensroreig but not a > ./freesurfer/dmri_train). > > Things are not necessarily setup so you can cd to ./freesurfer/<subdir> and > just build > what is there in isolation from the rest of the tree. > > But for ./freesiurfer/mri_train, you could try the following, which worked > for me on a Mac, e.g., > after changing mri_train.c, > > $ cd ./freesurfer/mri_train > $ rm -f mri_train mri_train.o > $ make -r mri_train > > - rob > > > > >> On May 2, 2018, at 5:37 PM, Ricardo Valle <ruyval...@gmail.com >> <mailto:ruyval...@gmail.com>> wrote: >> >> External Email - Use Caution >> >> >> Hello, >> >> I need help recompiling dmri_train for Mac. It seems like the instructions >> in the Mac Developer’s don’t work. >> >> When I cd to the trc subdirectory and run make, I am told there is nothing >> to do. I tried editing the Makefile, adding bin_PROGRAMS = dmri_train, at >> which point I got a different error. I then uncommented some other lines in >> the Makefile and managed to start compiling dmri_train, but I’ve been >> getting a never-ending sequence of errors, essentially telling me that the >> compiler can’t find various dependencies (boost/program_options.h, itk*.h, >> etc.). I’ve tried running ./configure with various flags that disable or >> enable various build options, copying over .h files from other locations, >> adding -I <path> directives for the compiler in the Makefile, etc. etc. to >> no avail. >> >> Thank you, >> Ruy >>> On Apr 30, 2018, at 5:19 PM, Ricardo Valle <ruyval...@gmail.com >>> <mailto:ruyval...@gmail.com>> wrote: >>> >>> Dear Freesurfer community, >>> >>> I am trying to recompile Freesurfer in order to get a binary of the latest >>> version of dmri_train. I have been following the instructions in the >>> Freesurfer Mac Developer’s page >>> <https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_mac_developers_page> >>> and am stuck at the following: >>> git annex get --metadata fstags=makeinstall . >>> >>> I am attaching the output (stdout and stderr) from this command to this >>> email. Please note that I called the git-annex repository mgh rather than >>> datasrc. The purpose of running this is so I can run make install. >>> >>> Is there a way of recompiling only dmri_train or only the dmri_* programs? >>> If not, do you know why git-annex might be giving me problems and how to >>> solve this? >>> >>> Thank you, >>> Ruy >>> <fs-annex-get.txt> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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