External Email - Use Caution Thank you very much. I´ll check that!.
On Wed, May 2, 2018 at 3:16 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > You are using two different versions of mri_segstats (probably two > different versions of FS) and getting different results. Why not just > use one version? > > > On 05/02/2018 01:24 PM, Fernanda Hansen P. de Moraes wrote: > > > > > > Good afternoon, > > > > I've got two types of aseg.stats results from the file automatically > > created from the regular script (recon-all -all). I am especially > > interested in the SupraTentorialVolNotVent. > > > > Here goes two examples: > > > > /Title Segmentation Statistics > > # > > # generating_program mri_segstats > > # cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks > > Exp $ > > # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > > mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent > > --subcortgray --in mri/norm.mgz --in-intensity-name norm > > --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol > > --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject > > SUBJ123 > > # sysname Linux > > # hostname rachael.localdomain > > # machine x86_64 > > # user fernanda.hansen > > # anatomy_type volume > > # > > # SUBJECTS_DIR > > > /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG > > # subjectname SUBJ123 > > # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter > > volume, 211672.093308, mm^3 > > # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter > > volume, 216185.270458, mm^3 > > # Measure Cortex, CortexVol, Total cortical gray matter volume, > > 427857.363767, mm^3 > > # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left > > hemisphere cortical white matter volume, 227845.296875, mm^3 > > # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right > > hemisphere cortical white matter volume, 227386.531250, mm^3 > > # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical > > white matter volume, 455231.828125, mm^3 > > # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, > > 171469.000000, mm^3 > > # Measure TotalGray, TotalGrayVol, Total gray matter volume, > > 599326.363767, mm^3 > > # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, > > 1050908.034545, mm^3 > > # Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3 > > # SegVolFile mri/aseg.mgz Title Segmentation Statistics > > # > > # generating_program mri_segstats > > # cvs_version $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks > > Exp $ > > # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > > mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent > > --subcortgray --in mri/norm.mgz --in-intensity-name norm > > --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol > > --totalgray --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject > > SUBJ123 > > # sysname Linux > > # hostname rachael.localdomain > > # machine x86_64 > > # user fernanda.hansen > > # anatomy_type volume > > # > > # SUBJECTS_DIR > > > /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS/DICOM_PARA_RECONVERSAO2NII/SEG > > # subjectname SUBJ123 > > # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter > > volume, 211672.093308, mm^3 > > # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter > > volume, 216185.270458, mm^3 > > # Measure Cortex, CortexVol, Total cortical gray matter volume, > > 427857.363767, mm^3 > > # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left > > hemisphere cortical white matter volume, 227845.296875, mm^3 > > # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right > > hemisphere cortical white matter volume, 227386.531250, mm^3 > > # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical > > white matter volume, 455231.828125, mm^3 > > # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, > > 171469.000000, mm^3 > > # Measure TotalGray, TotalGrayVol, Total gray matter volume, > > 599326.363767, mm^3 > > # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, > > 1050908.034545, mm^3 > > # Measure IntraCranialVol, ICV, Intracranial Volume, 1734351.873615, mm^3 > > # SegVolFile mri/aseg.mgz/ > > > > > > and > > > > /Title Segmentation Statistics > > # > > # generating_program mri_segstats > > # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve > > Exp $ > > # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > > mri/norm.mgz --empty --brainmask mri/brainmask.mgz > > --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent > > --subcortgray --in mri/norm.mgz --in-intensity-name norm > > --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol > > --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt > > --subject PRI018 > > # sysname Linux > > # hostname deckard.localdomain > > # machine x86_64 > > # user fernanda.hansen > > # anatomy_type volume > > # > > # SUBJECTS_DIR > > > /dados1/PROJETOS/PRJ1513_GIRIFICACAO_CONTROLES/03_PROCS/PREPROC_DATA/3DT1_ALZ_FOLLOWS > > # subjectname PRI018 > > # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, > > 939020.000000, mm^3 > > # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation > > Volume Without Ventricles, 903909.000000, mm^3 > > # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain > > Segmentation Volume Without Ventricles from Surf, 903725.881149, mm^3 > > # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter > > volume, 194350.327731, mm^3 > > # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter > > volume, 194703.516764, mm^3 > > # Measure Cortex, CortexVol, Total cortical gray matter volume, > > 389053.844495, mm^3 > > # Measure lhCorticalWhiteMatter, lhCorticalWhiteMatterVol, Left > > hemisphere cortical white matter volume, 182649.297520, mm^3 > > # Measure rhCorticalWhiteMatter, rhCorticalWhiteMatterVol, Right > > hemisphere cortical white matter volume, 182762.739133, mm^3 > > # Measure CorticalWhiteMatter, CorticalWhiteMatterVol, Total cortical > > white matter volume, 365412.036654, mm^3 > > # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, > > 52056.000000, mm^3 > > # Measure TotalGray, TotalGrayVol, Total gray matter volume, > > 518287.844495, mm^3 > > # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, > > 839187.881149, mm^3 > > # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, > > Supratentorial volume, 807827.881149, mm^3 > > # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, > > Supratentorial volume voxel count, 806671.000000, mm^3 > > # Measure Mask, MaskVol, Mask Volume, 1368243.000000, mm^3 > > # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of > > BrainSegVol to eTIV, 0.663000, unitless > > # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, > > 0.966056, unitless > > # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh > > surfaces prior to fixing, 62, unitless > > # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh > > surfaces prior to fixing, 93, unitless > > # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in > > surfaces prior to fixing, 155, unitless > > # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total > > Intracranial Volume, 1416319.091398, mm^3 > > # SegVolFile mri/aseg.mgz > > / > > How can I have the aseg.stats files all the same, with the > > SupraTentorialVolNotVent? > > > > Thank you in advance! > > -- > > Fernanda Hansen P. de Moraes > > Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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