External Email - Use Caution I'm running the follow command lines:
1) mri_glmfit --y ces.nii.gz --cortex --surf fsaverage rh --glmdir MMSE.wls --nii.gz --fsgd g1v1_MMSE.fsgd dods --C intercept.mtx --C slope.mtx --eres-save 2) mri_glmfit-sim --glmdir MMSE.wls --perm 1000 2.0 abs --cwp 0.05 --bg 1 --3spaces the computation N.2 (mri_glmfit-sim) is going ahead from two days... ...Poll 16733 job 1 Sun Apr 29 15:58:41 CEST 2018 I'm suspecting that some what in command lines is wrong... Please could you check it? Do you think that for my experimental question (I aiming to perform a within group correlatation between the thickness or FC and MMSE scores) should I use also PALM within mri_glmfit-sim computation? Thanks Best regards Stefano > Il 24 aprile 2018 alle 19.39 Douglas Greve <dgr...@mgh.harvard.edu> ha > scritto: > > > Try permutation > > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm > > > > On 4/24/18 8:21 AM, std...@virgilio.it mailto:std...@virgilio.it wrote: > > > > > > > > > > Hi, > > > > I'm performing a group analysis. > > > > I would like to investigate a simple correlation analysis within > > group, aiming to map the clusters showing correlation between the FC and > > the neuropsychological test scores (e.g. MMSE). Overall, the NPS test have > > not a normal distribution of their scores and, thus, parametric computation > > should be discouraged. > > > > Thanks > > > > > > Stefano > > > > > > > > > > > > > > > > > > > > > Il 19 aprile 2018 alle 18.11 "Douglas N. Greve" > > > > <dgr...@mgh.harvard.edu> mailto:dgr...@mgh.harvard.edu ha scritto: > > > > > > > > I'm not sure what you mean. Can you elaborate? Is this > > > > an individual > > > > analysis or a group analysis? > > > > > > > > On 04/18/2018 10:10 AM, std...@virgilio.it > > > > mailto:std...@virgilio.it wrote: > > > > > > > > > > > > > > > > > > > > > > > Hi list, > > > > > > > > > > which the best way to perform a whole-brain > > > > > correlation of the FC > > > > > assessed by FS-FAST with the volumetic or > > > > > neuropsychological outcomes? > > > > > Please note that my question is specifically > > > > > addressed to those > > > > > factors (neuropsycholgical scores or volume of > > > > > seed) did not show a > > > > > normal distribution and that cannot be trasformed. > > > > > > > > > > Thanks > > > > > > > > > > Kind regards > > > > > > > > > > Stefano > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > mailto:Freesurfer@nmr.mgh.harvard.edu > > > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > mailto:Freesurfer@nmr.mgh.harvard.edu > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > The information in this e-mail is intended only for the > > > > person to whom it is > > > > addressed. If you believe this e-mail was sent to you > > > > in error and the e-mail > > > > contains patient information, please contact the > > > > Partners Compliance HelpLine at > > > > http://www.partners.org/complianceline . If the e-mail > > > > was sent to you in error > > > > but does not contain patient information, please > > > > contact the sender and properly > > > > dispose of the e-mail. > > > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > mailto:Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the > > > person to whom it is > > > addressed. If you believe this e-mail was sent to you in > > > error and the e-mail > > > contains patient information, please contact the Partners > > > Compliance HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was > > > sent to you in error > > > but does not contain patient information, please contact the > > > sender and properly > > > dispose of the e-mail. > > > > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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