Hi Hisako you can use mris_anatomical_stats for this purpose.
cheers Bruce On Fri, 27 Apr 2018, Fujiwara, Hisako wrote:
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to compute absolute cortical thickness for each vertices within anatomical ROIs using apac.annot. I have successfully output the whole brain vertex wise cortical thickness using: mris_convert –c <subject>/surf/?h.thickness <subject>/surf/?h.org <subject>/surf/?hthickenss.asc Since this creates huge numbers (> e.g., 140,000) for each hemisphere for each participants, I would like to narrow out focus on the specific ROIs for relevant to our study? Is this achievable to add options to do? Thank you for your help in advance. Best regards, Hisako
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