Hi Dhivya if you are doing it in the space of the anatomicals, then use identity.nofile as the reg file (which is a special file name that will internally create an identity matrix). The output stem is whatever you pick - it will be prepended to the files that are written with the volume fractions.
cheers Bruce On Wed, 25 Apr 2018, Srinivasan, Dhivya wrote: > External Email - Use Caution > > Hi, > > I would like to get CSF/GM/WM segmentations from aseg.mgz or in other words > from labeled brain. Can I do that with mri_compute_volume_fractions ? Also, I > am not sure about the parameters to supply, > <reg file> and <output stem>? > > Could Someone point me to some documentation on how should use this function > to get the segmentations ? > > Thanks, > Dhivya > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
