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Thank you for the reply!
I deleted the contrasts and run this command line:
selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF -no-con-ok
------- matlab output --------------------
MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016b (9.1.0.441655) 64-bit (glnxa64)
September 7, 2016
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
>> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
>> /usr/local/freesurfer/matlab/MRIread.m
>> >> >> starting fast_selxavg3b
#@# MonkeyCassis-FF ###############################
/usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
-------------------------
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
-------------------------
outtop = /usr/local/freesurfer/fsfast/Monkeys
Extension format = nii.gz
INFO: key nSliceGroups unrecognized, line 11, skipping
Subscripted assignment dimension mismatch.
Error in fast_ldpar4 (line 97)
par4(nthrow,1) = tonset;
Error in flac_customize (line 121)
[par partype] = fast_ldpar4(parpath);
Error in fast_selxavg3b (line 129)
flac0 = flac_customize(flac0);
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
2018-04-24 20:27 GMT+03:00 Douglas Greve <dgr...@mgh.harvard.edu>:
> Try deleting the contrasts (.mat files) and rerunning
>
> On 4/24/18 5:48 AM, Francesca Strappini wrote:
>
>
> Dear FreeSurfer experts,
>
> I'm trying to analyze some monkey functional data. I got this error
> message with selxavg3-sess.
>
> I run the following commands:
>
> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast ON-vs-OFF -a 1
> -c 0
> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast ON-vs-OFF -a 1
> -c 0
> preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s MonkeyCassis-FF -fsd
> bold -per-session
> selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF
>
>
> ------- matlab output --------------------
> MATLAB is selecting SOFTWARE OPENGL rendering.
>
> < M A T L A B (R) >
> Copyright 1984-2016 The MathWorks, Inc.
> R2016b (9.1.0.441655) 64-bit (glnxa64)
> September 7, 2016
>
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com.
>
> >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
> >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
> >> /usr/local/freesurfer/matlab/MRIread.m
> >> >> >> starting fast_selxavg3b
>
>
> #@# MonkeyCassis-FF ###############################
> /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
> -------------------------
> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
> -------------------------
> outtop = /usr/local/freesurfer/fsfast/Monkeys
> Extension format = nii.gz
> INFO: key nSliceGroups unrecognized, line 11, skipping
> 1 ON-vs-OFF.mat
> Subscripted assignment dimension mismatch.
>
> Error in fast_ldpar4 (line 97)
> par4(nthrow,1) = tonset;
>
> Error in flac_customize (line 121)
> [par partype] = fast_ldpar4(parpath);
>
> Error in fast_selxavg3b (line 129)
> flac0 = flac_customize(flac0);
>
> >> ------------------------------------------
> ERROR: fast_selxavg3() failed\n
>
> Thank you!
> Best
>
> Francesca
>
> --
> Francesca Strappini, Ph.D.
> Neurobiology Department
> Weizmann Institute of Science
> 234 Herzl Street, Rehovot 7610001 Israel
> Tel.: +972 58 444 2584
> E-mail: francesca.strapp...@weizmann.ac.il
>
>
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--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strapp...@weizmann.ac.il
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