Try deleting the contrasts (.mat files) and rerunning
On 4/24/18 5:48 AM, Francesca Strappini wrote:
Dear FreeSurfer experts,
I'm trying to analyze some monkey functional data. I got this error
message with selxavg3-sess.
I run the following commands:
mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast ON-vs-OFF
-a 1 -c 0
mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast ON-vs-OFF
-a 1 -c 0
preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s MonkeyCassis-FF
-fsd bold -per-session
selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF
------- matlab output --------------------
MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016b (9.1.0.441655) 64-bit (glnxa64)
September 7, 2016
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com
<http://www.mathworks.com>.
>> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m
>> /usr/local/freesurfer/matlab/MRIread.m
>> >> >> starting fast_selxavg3b
#@# MonkeyCassis-FF ###############################
/usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF
-------------------------
$Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $
-------------------------
outtop = /usr/local/freesurfer/fsfast/Monkeys
Extension format = nii.gz
INFO: key nSliceGroups unrecognized, line 11, skipping
1 ON-vs-OFF.mat
Subscripted assignment dimension mismatch.
Error in fast_ldpar4 (line 97)
par4(nthrow,1) = tonset;
Error in flac_customize (line 121)
[par partype] = fast_ldpar4(parpath);
Error in fast_selxavg3b (line 129)
flac0 = flac_customize(flac0);
>> ------------------------------------------
ERROR: fast_selxavg3() failed\n
Thank you!
Best
Francesca
--
Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strapp...@weizmann.ac.il
<mailto:francesca.strapp...@weizmann.ac.il>
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